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bischof c parallel computing architectures algorithms applications 2008

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Textbook in PDF format Parallel processing technologies have become omnipresent in the majority of new processors for a wide spectrum of computing equipment from game computers and standard PC’s to workstations and supercomputers. The main reason for this trend is that parallelism theoretically enables a substantial increase in processing power using standard technologies. This results in a substantial reduction in cost compared to that of developing specialised high-performance hardware. Today the processing capacity of a desktop PC with a multicore processor supersedes the compute power of a supercomputer of two decades ago at a fraction of the cost. The utilisation of such powerful equipment requires suitable software. In practice it appears that the construction of appropriate parallel algorithms and the development of system and application software that can exploit the advantages of parallel hardware is not a simple matter. These problems have been studied for nearly five decades and, although much progress was made in the areas of parallel architectures, algorithm and software design, major problems remain to be addressed. The increasing replication of processing elements on chips and the use of standard components (COTS) for the relatively easy assembly of parallel systems comprising of a large number of processors (MPP) to achieve hitherto unachievable processing capacities, highlight the problems associated with the utilisation of these. Combined with the fast growth in the number of multi-core processors for PC’s there is an increasing need for methods and tools to support the development of software to effectively and efficiently utilise parallel structures. The international Parallel Computing conference series (ParCo) reported on progress and stimulated research in the high speed computing field over the past quarter century. New research results and techniques associated with the development and use of parallel systems were discussed at ParCo2007. This international event brought together a number of the top researchers in the field of parallel computing. Their research interests covered all aspects from architectures and networks to software engineering and application development. The use of FPGA’s (Free Programmable Gate Arrays) was discussed in the same vein as the development of software for multi-core processors. Papers on a wide variety of application areas using high performance computers were presented. In contrast to software for specialised high speed computing applications, where specialists spend considerable time to optimise a particular piece of code, the challenge for the future is to make software development tools available that allow non-specialists to develop ‘good’ parallel software with minimum effort. All of these areas are in dire need of fundamentally new ideas to overcome the limitations imposed by existing paradigms. Invited Talks Enhancing OpenMP and Its Implementation for Programming Multicore Systems Efficient Parallel Simulations in Support of Medical Device Design Particle and Atomistic Simulation Domain Decomposition for Electronic Structure Computations Load Balanced Parallel Simulation of Particle-Fluid DEM-SPH Systems with Moving Boundaries Communication and Load Balancing of Force-Decomposition Algorithms for Parallel Molecular Dynamics Aspects of a Parallel Molecular Dynamics Software for Nano-Fluidics Massively Parallel Quantum Computer Simulations: Towards Realistic Systems Image Processing and Visualization Lessons Learned Using a Camera Cluster to Detect and Locate Objects Hybrid Parallelization for Interactive Exploration in Virtual Environments Performance Modeling and Tools Analysis of the Weather Research and Forecasting (WRF) Model on Large-Scale Systems Analytical Performance Models of Parallel Programs in Clusters Computational Force: A Unifying Concept for Scalability Analysis Distribution of Periscope Analysis Agents on ALTIX 4700 Visualizing Parallel Functional Program Runs: Case Studies with the Eden Trace Viewer Automatic Phase Detection of MPI Applications Biomedical Applications Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing A Parallel Workflow for the Reconstruction of Molecular Surfaces HPC Simulation of Magnetic Resonance Imaging A Load Balancing Framework in Multithreaded Tomographic Reconstruction Parallel Algorithms Parallelisation of Block-Recursive Matrix Multiplication in Prefix Computations Parallel Exact Inference Efficient Parallel String Comparison Parallel Programming Models Implementing Data-Parallel Patterns for Shared Memory with OpenMP Generic Locking and Deadlock-Prevention with C++ Parallelizing a Real-Time Steering Simulation for Computer Games with OpenMP A Framework for Performance-Aware Composition of Explicitly Parallel Components A Framework for Prototyping and Reasoning about Distributed Systems Formal Semantics Applied to the Implementation of a Skeleton-Based Parallel Programming Library Numerical Algorithms and Automatic Differentiation Strategies for Parallelizing the Solution of Rational Matrix Equations A Heterogeneous Pipelined Parallel Algorithm for Minimum Mean Squared Error Estimation with Ordered Successive Interference Cancellation OpenMP Implementation of the Householder Reduction for Large Complex Hermitian Eigenvalue Problems Multigrid Smoothers on Multicore Architectures Parallelization of Multilevel Preconditioners Constructed from Inverse-Based ILUs on Shared-Memory Multiprocessors Parallelism in Structured Newton Computations Automatic Computation of Sensitivities for a Parallel Aerodynamic Simulation Parallel Jacobian Accumulation Scheduling Layer-Based Scheduling Algorithms for Multiprocessor-Tasks with Precedence Constraints Unified Scheduling of I/O- and Computation-Jobs for Climate Research Environments Fault Tolerance Towards Fault Resilient Global Arrays Using AOP to Automatically Provide Distribution, Fault Tolerance, and Load Balancing to the CORBA–LC Component Model VirtuaLinux: Virtualized High-Density Clusters with no Single Point of Failure Performance Analysis Analyzing Cache Bandwidth on the Intel Core 2 Architecture Analyzing Mutual Influences of High Performance Computing Programs on SGI Altix 3700 and 4700 Systems with PARbench Low-level Benchmarking of a New Cluster Architecture Comparative Study of Concurrency Control on Bulk-Synchronous Parallel Search Engines Gb Ethernet Protocols for Clusters: An OpenMPI, TIPC, GAMMA Case Study Performance Measurements and Analysis of the BlueGene/L MPI Implementation Potential Performance Improvement of Collective Operations in UPC Parallel Data Distribution and I/O Optimization Strategies for Data Distribution Schemes in a Parallel File System Parallel Redistribution of Multidimensional Data Parallel I/O Aspects in PIMA(GE)2 Lib Fluid and Magnetohydrodynamics Simulation Parallelisation of a Geothermal Simulation Package: A Case Study on Four Multicore Architectures A Lattice Gas Cellular Automata Simulator on the Cell Broadband EngineTM Massively Parallel Simulations of Solar Flares and Plasma Turbulence Object-Oriented Programming and Parallel Computing in Radiative Magnetohydrodynamics Simulations Parallel Simulation of Turbulent Magneto-hydrodynamic Flows Pseudo-Spectral Modeling in Geodynamo Parallel Tools and Middleware Design and Implementation of a General-Purpose API of Progress and Performance Indicators Efficient Object Placement including Node Selection in a Distributed Virtual Machine Memory Debugging of MPI-Parallel Applications in Open MPI Hyperscalable Applications Massively Parallel All Atom Protein Folding in a Single Day Simulations of QCD in the Era of Sustained Tflop/s Computing Optimizing Lattice QCD Simulations on BlueGene/L Parallel Computing with FPGAs IANUS: Scientific Computing on an FPGA-Based Architecture Optimizing Matrix Multiplication on Heterogeneous Reconfigurable Systems Mini-Symposium “The Future of OpenMP in the Multi-Core Era” The Future of OpenMP in the Multi-Core Era Towards an Implementation of the OpenMP Collector API Mini-Symposium “Scaling Science Applications on Blue Gene” Scaling Science Applications on Blue Gene Turbulence in Laterally Extended Systems Large Simulations of Shear Flow in Mixtures via the Lattice Boltzmann Equation Simulating Materials with Strong Correlations on BlueGene/L Massively Parallel Simulation of Cardiac Electrical Wave Propagation on Blue Gene Mini-Symposium “Scalability and Usability of HPC Programming Tools” Scalability and Usability of HPC Programming Tools Benchmarking the Stack Trace Analysis Tool for BlueGene/L Scalable, Automated Performance Analysis with TAU and PerfExplorer Developing Scalable Applications with Vampir, VampirServer and VampirTrace Scalable Collation and Presentation of Call-Path Profile Data with CUBE Coupling DDT and Marmot for Debugging of MPI Applications Compiler Support for Efficient Instrumentation Comparing Intel Thread Checker and Sun Thread Analyzer Continuous Runtime Profiling of OpenMP Applications Mini-Symposium “DEISA: Extreme Computing in an Advanced Supercomputing Environment” DEISA: Extreme Computing in an Advanced Supercomputing Environment DEISA: Enabling Cooperative Extreme Computing in Europe Development Strategies for Modern Predictive Simulation Codes Submission Scripts for Scientific Simulations on DEISA Application Enabling in DEISA: Petascaling of Plasma Turbulence Codes HEAVY: A High Resolution Numerical Experiment in Lagrangian Turbulence Atomistic Modeling of the Membrane-Embedded Synaptic Fusion Complex: a Grand Challenge Project on the DEISA HPC Infrastructure Mini-Symposium “Parallel Computing with FPGAs” Parallel Computing with FPGAs - Concepts and Applications Parallel Computing with Low-Cost FPGAs: A Framework for COPACOBANA Accelerating the Cube Cut Problem with an FPGA-Augmented Compute Cluster A Run-time Reconfigurable Cache Architecture Novel Brain-Derived Algorithms Scale Linearly with Number of Processing Elements Programmable Architectures for Realtime Music Decompression The HARWEST High Level Synthesis Flow to Design a Special-Purpose Architecture to Simulate the 3D Ising Model Towards an FPGA Solver for the PageRank Eigenvector Problem

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bischof c parallel computing architectures algorithms applications 2008

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